SqueakR is an R package for managing and visualizing ultrasonic vocalization (USV) data produced by the DeepSqueak detection software. It organizes scored call data into experiment objects and provides a code-free Shiny dashboard as well as direct plotting functions in RStudio.

What’s covered#

  • Adding new data – add_timepoint_data, score_timepoint_data, add_to_experiment
  • Managing experiment objects – structure and navigation of the experiment object
  • SqueakR pipelines – semisqueakRpipeline (semi-automatic) and autosqueakRpipeline (Google Sheets)
  • Visualizations – graphs generated from scored call data
  • SqueakR Dashboard – Shiny interface for visualization and analysis without code
  • Learning – Swirl-based interactive tutorial